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    Home » Recipes » Breakfast

    Baked Egg Bites with Cottage Cheese (High Protein)

    Published: Feb 6, 2025 by Vaishali · This post may contain affiliate links · 5 Comments

    Jump to Recipe Print Recipe

    Craving a protein-packed breakfast that's as healthy as it is convenient? These fluffy baked egg bites with cottage cheese are protein-rich and delicious. Use this recipe for a make-ahead healthy breakfast that'll revolutionize your morning routine.

    Sliced half of a baked egg bite with onion and tomato stacked on top of two other egg bites on a wooden chopping block.

    If you've ever wondered how to recreate those egg bites from your favorite coffee shop at home, I'm about to let you in on a game-changing secret: cottage cheese. Yes, you read that right! It is the key to achieving that incredible texture we crave in our breakfast eggs along with a boost of protein.

    Like many of you, I have been looking to add more protein to our diet. Eggs are a breakfast staple in our house but I wanted to add something more and was also playing with breakfast meal prep ideas. We have been adding cottage cheese to our omelettes and herbed scrambled eggs lately so I thought why not! And if you already love cottage cheese, I'm sure you'll also enjoy my savory high-protein cottage cheese bowl recipe and this healthy avocado cottage cheese dip.

    Jump to:
    • ✨Why you'll love this recipe?
    • 📋Recipe Ingredients
    • 📖Substitutions, Additions and Variations
    • 👩‍🍳Steps to make this recipe
    • 💡Vaishali's Tips!
    • My High-speed blender
    • 🫙Storage, freezing, and reheating instructions
    • ❓FAQ
    • Related
    • Baked Egg Bites with Cottage Cheese (High Protein)

    ✨Why you'll love this recipe?

    • Higher Protein - The cottage cheese gives the eggs an even higher protein boost while keeping the eggs moist and fluffy.
    • Budget friendly - Make a batch at home and have egg bites for the entire week. Much more friendly on the pocket as compared to the famous coffee chain (you know which 😎).
    • Great for meal-prep - Blend and bake the ingredients to get these perfect egg bites for the entire week. These are also great for on the go snack!

    📋Recipe Ingredients

    Ingredients for baked egg bites on a wooden background including eggs, cottage cheese, salt, pepper, garlic powder, cilantro, tomato, onion, and cheese.
    • Eggs - I have used large eggs (as sold in US grocery stores) in this recipe. If the eggs you use are smaller or larger than an average large egg sold in the USA, it might effect baking time and total number of the egg bites.
    • Shredded cheese - I always recommend buying a block of cheese and shredding it yourself (like in my vegetable grilled cheese recipe) to avoid any unnecessary additives. A box grater or food processor fitted with grating disc works great for this. I have used pepperjack cheese in this recipe.
    • Cottage Cheese - use your favorite brand, whatever fat content and curd size you like. This recipe will work great with all different kinds of cottage cheese. I have used no-fat, small curd cottage cheese.

    Don't forget to check out the recipe card below for a complete list of ingredients along with the quantities.

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    📖Substitutions, Additions and Variations

    This baked egg bites with cottage cheese recipe is very versatile. You can take this recipe in many different directions by making following variations:

    • Full fat cottage cheese - instead of low or no-fat cottage cheese will make the eggs creamier
    • Caprese egg bites - use chopped tomatoes, basil, and mozzarella cheese
    • Mediterranean - spinach, feta cheese, and sun-dried tomatoes
    • Masala - add chopped green chili and a pinch of my homemade garam masala

    👩‍🍳Steps to make this recipe

    Preheat the oven to 350°F (175°C). Take a rimmed cookie sheet and put a standard size 12 cup muffin pan in it. Line the muffin tin with silicon liners and spray them generously with non stick baking spray. Set a pan of water to boil on high heat.

    Step 1: In a blender, combine eggs, cottage cheese, and shredded cheese (Image 1).

    Step 2: Add salt, pepper, and garlic powder (Image 2).

    Egg whites and yokes, cottage cheese, and shredded cheese in the jar of a blender.
    Egg whites and yokes, cottage cheese, and shredded cheese in the jar of a blender along with seasoning and black pepper coming from a handheld pepper mill.

    Step 3: Blend until smooth and no cottage cheese lumps remain, about 30 seconds (Image 3).

    Step 4: Using a whisk or a spoon, mix in chopped onion, tomatoes, and cilantro (Image 4).

    Egg and cheese mixture in a blender jar..
    Egg and cheese mixture with chopped cilantro, onions, and tomatoes in a blender jar with a whisk in a hand.

    Step 5: Pour the egg bites mixture evenly into the prepared muffin tin, filling each cup about ¾ full (Image 5).

    Step 6: Pour boiling water into the rimmed cookie sheet so that the water is about ½ an inch high (Image 6). Bake for 20-25 minutes, or until the egg bites are set and lightly golden on top. A toothpick inserted into the center should come out clean. Let cool in the pan for 5 minutes.

    Egg and cheese mixture with chopped cilantro, onions, and tomatoes in a lined muffin pan.
    Egg and cheese mixture with chopped cilantro, onions, and tomatoes in a lined muffin pan kept in a cookie sheet with water in it.

    💡Vaishali's Tips!

    • Line the muffin pan - I use silicone muffin liners and spray them with non-stick spray for easier removal.
    • The water bath - is absolutely critical to get the consistent, fluffy and creamy texture. It ensures even baking of the egg and cheese custard and that the egg bites do not deflate after baking.
    • Let the egg bites cool - slightly before removing from the pan (about 5-10 minutes).
    • Do not overfill - the muffin cups as the egg bites will puff up during baking. About ¾th full works just right.
    • For meal-prep - once cooled, I remove the liners from the baked egg bites before storing the egg bites in the refrigerator. This prevents condensation from forming in your storage container, which can make them soggy.
    Baked egg bite with onion and tomato in a silicon liners lined muffin pan.

    Egg and cheese mixture in a blender jar..

    the best!

    My High-speed blender

    I love using my Blendtec blender to make the egg mixture. It not only blends the ingredients together but also whips in air which makes the egg bites light and fluffy.

    Buy it here →

    🫙Storage, freezing, and reheating instructions

    • Store in an airtight container for up to 5 days.
    • Can be frozen for up to 3 months. Flash freeze the cooled egg bites on a lined cookie sheet for an hour. Then remove and store in a zip top freezer bag.
    • Reheat in the microwave for 30-45 seconds. If frozen, thaw and then reheat.

    ❓FAQ

    Why are my egg bites rubbery?

    Overcooking can cause the egg bites to turn rubbery. Keep an eye on your egg bites between 20-25 minute baking time and take them out of the oven after they're just set.

    Why are Starbucks egg bites so fluffy?

    Cottage cheese is a surprising star of these egg bites as it adds moisture and creaminess to create that signature fluffy texture that makes the Starbucks version so popular.

    How do you stop egg bites from deflating?

    The water bath! This technique prevents your egg bites from deflating. By setting your muffin tin in a cookie sheet with shallow pool of hot water (about ¼ to ½ inch deep), you create a gentle, humid environment that controls how quickly the eggs expand. Otherwise, air pockets can form and burst during baking, leading to deflated bites once they cool.

    Baked egg bites with onion, cilantro and tomato stacked on top of two other egg bites on a wooden chopping block.

    Related

    Looking for other recipes like this? Try these:

    • Veggie-Frittata
      Frittata Recipe | Easy, Vegetarian
    • A ceramic bowl with cottage cheese, chopped veggies, seasoning, peanuts, and chopped cilantro in a hand on a white marble background.
      Savory High Protein Cottage Cheese Bowl
    • Egg Curry – Hard-boiled Eggs in Flavorful Indian Masala
    • Herbed Scrambled Eggs

    If you make this recipe be sure to leave a comment and let me know how you liked it! Share it on Instagram with the hashtag #thekitchendocs or share on Facebook, too.

    Love – Vaishali

    Sliced half of a baked egg bite with onion and tomato stacked on top of two other egg bites on a wooden chopping block.

    Baked Egg Bites with Cottage Cheese (High Protein)

    Vaishali
    Craving a protein-packed breakfast that's as healthy as it is convenient? These fluffy baked egg bites with cottage cheese are protein-rich and delicious. Use this recipe for a make-ahead healthy breakfast that'll revolutionize your morning routine.
    5 from 3 votes
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 25 minutes mins
    Course Breakfast
    Cuisine American
    Servings 12 egg bites
    Calories 85 kcal

    Equipment

    • Blender

    Ingredients
      

    • 6 eggs large
    • 1 cup cottage cheese
    • 1 cup shredded pepperjack cheese
    • ½ cup chopped onion
    • ½ cup chopped tomato
    • ¼ cup chopped cilantro
    • 1 teaspoon garlic powder optional
    • ½ teaspoon salt
    • Fresh cracked black pepper to tatse
    • Cooking spray

    Instructions
     

    • Preheat the oven to 350°F (175°C). Take a rimmed cookie sheet and put a standard size 12 cup muffin pan in it. Line the muffin tin with silicon liners and spray them generously with non stick baking spray. Set a pan of water to boil on high heat.
    • In a blender, combine eggs, cottage cheese, and shredded cheese along with salt, pepper, and garlic powder.
    • Blend until smooth and no cottage cheese lumps remain, about 30 seconds. Using a whisk or a spoon, mix in chopped onion, tomatoes, and cilantro
    • Pour the egg bites mixture evenly into the prepared muffin tin, filling each cup about ¾ full
    • Carefully pour boiling water into the rimmed cookie sheet so that the water is about ¼ to ½ an inch high. Bake for 20-25 minutes, or until the egg bites are set and lightly golden on top. A toothpick inserted into the center should come out clean. Let cool in the pan for 5 minutes before enjoying!

    Notes

    • For detailed visual guidance, I've included step-by-step photos and instructions in the blog post above to help you through each stage of the recipe.
    • Eggs - I have used large eggs (as sold in US grocery stores) in this recipe. If the eggs you use are smaller or larger than an average large egg sold in the USA, it might effect baking time and total number of the egg bites.
    • Shredded cheese - I always recommend buying a block of cheese and shredding it yourself (like in my vegetable grilled cheese recipe) to avoid any unnecessary additives. A box grater or food processor fitted with grating disc works great for this. I have used pepperjack cheese in this recipe.
    • Cottage Cheese - use your favorite brand, whatever fat content and curd size you like. This recipe will work great with all different kinds of cottage cheese. I have used no-fat, small curd cottage cheese.
    • Line the muffin pan - I use silicone muffin liners and spray them with non-stick spray for easier removal.
      The water bath - is absolutely critical to get the consistent, fluffy and creamy texture. It ensures even baking of the egg and cheese custard and that the egg bites do not deflate after baking.
    • For meal-prep - once cooled, I remove the liners from the baked egg bites before storing the egg bites in the refrigerator. This prevents condensation from forming in your storage container, which can make them soggy.
    • Do not overfill - the muffin cups as the egg bites will puff up during baking. About ¾th full works just right.
    • Let the egg bites cool - slightly before removing from the pan (about 5-10 minutes).
     

    Nutrition

    Calories: 85kcalCarbohydrates: 2gProtein: 8gFat: 5gSaturated Fat: 3gPolyunsaturated Fat: 1gMonounsaturated Fat: 2gTrans Fat: 0.01gCholesterol: 91mgSodium: 262mgPotassium: 83mgFiber: 0.2gSugar: 1gVitamin A: 273IUVitamin C: 1mgCalcium: 97mgIron: 1mg
    Tried this recipe?Let us know how it was!

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    Reader Interactions

    Comments

    1. KEVIN FOODIE

      February 09, 2025 at 12:27 am

      5 stars
      You shared an interesting take on traditional egg bites. Yours looks better and is far less expensive than the Starbucks version. Appreciate the recipe.

      Reply
    2. CM

      February 08, 2025 at 7:25 pm

      5 stars
      Made a batch and loved these. Some were consumed right away and rest are for the week. My son enjoyed them with ketchup...lol

      Reply
      • Vaishali

        February 08, 2025 at 7:26 pm

        Thanks CM. Love the idea of dipping these egg bites in ketchup! Reminds me of eating omelette with ketchup.

        Reply
    3. Jarrod

      February 08, 2025 at 9:53 am

      5 stars
      I don't know if I'm hungry or if these look that good! I want them!!!!

      Reply
      • Vaishali

        February 08, 2025 at 7:25 pm

        Ha ha...thanks Jarrod. I hope you enjoy making them!

        Reply
    5 from 3 votes

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    Hey, I'm Vaishali!

    Welcome! I am so excited to cook and talk life with you. Here, you will find my kitchen journal full of mostly healthyish recipes that are family friendly, use seasonal and fresh ingredients, plant forward, packed with healing Indian spices and indulgent desserts.

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